Nan-kuei Chen

Chapters

• Chen, N. (2014). A Unified Machine Learning Method for Task-related and Resting State fMRI data Analysis. In 2014 36th Annual International Conference of the Ieee Engineering in Medicine and Biology Society (Embc).
• Chen, N. (2005). 76-space analysis of grey matter diffusivity: Methods and applications. In Medical Image Computing and Computer-Assisted Intervention - Miccai 2005, Pt 1.
• Chen, N. (2004). MRI intensity nonuniformity correction using simultaneously spatial and gray-level histogram information. In Medical Imaging 2004: Image Processing, Pts 1-3.

Journals/Publications

• Bell, R. P., Meade, C. S., Gadde, S., Towe, S. L., Hall, S. A., & Chen, N. K. (2022). Principal component analysis denoising improves sensitivity of MR diffusion to detect white matter injury in neuroHIV. Journal of neuroimaging : official journal of the American Society of Neuroimaging.
• Chen, N. K., Bell, R. P., & Meade, C. S. (2021). On the down-sampling of diffusion MRI data along the angular dimension. Magnetic resonance imaging, 82, 104-110.
• Haugg, A., Renz, F. M., Nicholson, A. A., Lor, C., Götzendorfer, S. J., Sladky, R., Skouras, S., McDonald, A., Craddock, C., Hellrung, L., Kirschner, M., Herdener, M., Koush, Y., Papoutsi, M., Keynan, J., Hendler, T., Cohen Kadosh, K., Zich, C., Kohl, S. H., , Hallschmid, M., et al. (2021). Predictors of real-time fMRI neurofeedback performance and improvement - A machine learning mega-analysis. NeuroImage, 237, 118207.
• Howard, C. M., Jain, S., Cook, A. D., Packard, L. E., Mullin, H. A., Chen, N. K., Liu, C., Song, A. W., & Madden, D. J. (2022). Cortical iron mediates age-related decline in fluid cognition. Human brain mapping, 43(3), 1047-1060.
• Zhuang, J., Madden, D. J., Cunha, P., Badea, A., Davis, S. W., Potter, G. G., Lad, E. M., Cousins, S. W., Chen, N. K., Allen, K., Maciejewski, A. J., Fernandez, X. D., Diaz, M. T., & Whitson, H. E. (2021). Cerebral white matter connectivity, cognition, and age-related macular degeneration. NeuroImage. Clinical, 30, 102594.
• Haugg, A., Sladky, R., Skouras, S., McDonald, A., Craddock, C., Kirschner, M., Herdener, M., Koush, Y., Papoutsi, M., Keynan, J. N., Hendler, T., Cohen Kadosh, K., Zich, C., MacInnes, J., Adcock, R. A., Dickerson, K., Chen, N. K., Young, K., Bodurka, J., , Yao, S., et al. (2020). Can we predict real-time fMRI neurofeedback learning success from pretraining brain activity?. Human brain mapping.
• Kuo, P. H., Zhang, X., Stuehm, C., Chou, Y., & Chen, N. (2020). Functional Magnetic Resonance Imaging Reveals Taiji’s Real-time Effects on Neuronal Networks of the Brain. The Journal of Chinese Health Practices, 1(1).
• Kuo, P. H., Zhang, X., Stuehm, C., Chou, Y., & Chen, N. (2020). Functional Magnetic Resonance Imaging Reveals Taiji’s Real-time Effects on Neuronal Networks of the Brain. The Journal of the International Society of Chinese Health Practices, 1.
• Sui, J., Li, X., Bell, R. P., Towe, S. L., Gadde, S., Chen, N. K., & Meade, C. S. (2020). Structural and functional brain abnormalities in HIV disease revealed by multimodal MRI fusion: association with cognitive function. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
• Sundman, M. H., Lim, K., Ton That, V., Mizell, J. M., Ugonna, C., Rodriguez, R., Chen, N. K., Fuglevand, A. J., Liu, Y., Wilson, R. C., Fellous, J. M., Rapcsak, S., & Chou, Y. H. (2020). Transcranial magnetic stimulation reveals diminished homoeostatic metaplasticity in cognitively impaired adults. Brain communications, 2(2), fcaa203.
• Zuo, X., Zhuang, J., Chen, N., Cousins, S., Cunha, P., Lad, E. M., Madden, D. J., Potter, G., & Whitson, H. E. (2020). Relationship between neural functional connectivity and memory performance in age-related macular degeneration. Neurobiology of aging, 95, 176-185.
• Chen, N. (2019). Bootstrap analysis of diffusion tensor and mean apparent propagator parameters derived from multiband diffusion MRI. Magnetic Resonance in Medicine.
• Chen, N. (2019). Synergistic effects of marijuana abuse and HIV infection on neural activation during a cognitive interference task. Addiction Biology.
• Chen, N. (2019). The use of Fourier‐domain analyses for unwrapping phase images of low SNR. Magnetic Resonance in Medicine.
• Bell, R. P., Barnes, L. L., Towe, S. L., Chen, N. K., Song, A. W., & Meade, C. S. (2018). Structural connectome differences in HIV infection: brain network segregation associated with nadir CD4 cell count. Journal of neurovirology, 24(4), 454-463.

Proceedings Publications

• Bilgin, A., Do, L., Martin, P. A., Lockhart, E., Bernstein, A. S., Ugonna, C., Dieckhaus, L., Comrie, C., Hutchinson, E. B., Chen, N., Alexander, G. E., Barnes, C. A., & Trouard, T. P. (2021). Accelerating Diffusion Tensor Imaging of the Rat Brain using Deep Learning. In Annual Meeting of the International Society for Magnetic Resonance in Medicine.
• Weinkauf, C. C., Trouard, T. P., Chou, Y., Chen, N., Guzman Perez-Carrillo, G., Ryan, T. L., Altbach, M. I., Johnson, K., Bruck, D., Ugonna, C., McKinnon, A., Bernstein, A. S., & Lindley, M. (2019, Spring). Functional and Microstructural Changes in the Brain After Carotid Endarterectomy. In International Society for Magnetic Resonance in Medicine.
• Bernstein, A., Chen, N., & Trouard, T. P. (2018, June). A Bootstrap Analysis of Diffusion MRI Parameters Derived from Simultaneous Multislice Diffusion MRI. In Joint International Society for Magnetic Resonance in Medicine & The European Society for Magnetic Resonance in Medicine and Biology (ISMRM-ESMRMB) Annual Meeting.
• Chen, N., Chen, N., Chang, H. C., Chang, H. C., Bilgin, A., Bilgin, A., Bernstein, A., Bernstein, A., Trouard, T. P., Trouard, T. P., Chen, N., Chang, H. C., Bilgin, A., Bernstein, A., & Trouard, T. P. (2018, June). A diffusion-matched principal component analysis (DM-PCA) based denoising procedure for high-resolution diffusion-weighted MRI. In Joint International Society for Magnetic Resonance in Medicine & The European Society for Magnetic Resonance in Medicine and Biology (ISMRM-ESMRMB) Annual Meeting.
• Lindley, M., Bernstein, A., Ugonna, C., Bruck, D., Johnson, K., Altbach, M. I., Ryan, L., Chen, N., Chou, Y., Guzman Perez-Carrillo, G., Trouard, T. P., & Weinkauf, C. C. (2018, June). Impact of Carotid Endarterectomy on Functional Connectivity. In Joint International Society for Magnetic Resonance in Medicine & The European Society for Magnetic Resonance in Medicine and Biology (ISMRM-ESMRMB) Annual Meeting, 5562.

Poster Presentations

• Fisher, J. M., Rubio, A., Dolby, A., Ugonna, C. P., Bedrick, E. J., & Chen, N. (2023, May). Threshold-Free Identification of Group-Difference Networks in Neural Connectivity Data. Statistical Methods in Imaging. Minneapolis, Minnesota: Statistics in Imaging Section of the American Statistical Association.