Ali Bilgin

Journals/Publications

• Fu, Z., Mandava, S., Keerthivasan, M. B., Li, Z., Martin, D. R., Altbach, M. I., & Bilgin, A. (2020). A Multi-scale Residual Network for Accelerated Radial MR Parameter Mapping. Magnetic Resonance Imaging, 73, 152-162.
• Liu, F., Ahanonu, E. L., Marcellin, M. W., Lin, Y., Ashok, A., & Bilgin, A. (2020). Visibility of Quantization Errors in Reversible JPEG2000. Signal Processing: Image Communication, 84, 115812.
• Umapathy, L., Winegar, B., MacKinnon, L., Hill, M., Altbach, M. I., Miller, J. M., & Bilgin, A. (2020). Fully Automated Segmentation of Globes for Volume Quantification in CT Orbits Images Using Deep Learning. American Journal of Neuroradiology, A6538. doi:DOI: 10.3174/ajnr.A6538
• Keerthivasan, M. B., Johnson, K., Saranathan, M., Fu, Z., Weinkauf, C. C., Martin, D. R., Bilgin, A., & Altbach, M. I. (2019). An Efficient 3D Stack-of-Stars TSE Pulse Sequence for Simultaneous T2-weighted Imaging and T2 Mapping. Magnetic Resonance in Medicine, 82(1), 326-341.
• Li, Z., Bilgin, A., Johnson, K., Galons, J. P., Vedantham, S., Martin, D. R., & Altbach, M. I. (2019). Rapid high-resolution T mapping using a highly accelerated radial steady-state free-precession technique. Journal of magnetic resonance imaging : JMRI, 49(1), 239-252.
• Mandava, S., Keerthivasan, M. B., Martin, D. R., Altbach, M. I., & Bilgin, A. (2019). Radial streak artifact reduction using phased array beamforming. Magnetic resonance in medicine, 81, 3915-3923.
• Chen, N., Chang, H., Bilgin, A., Bernstein, A., & Trouard, T. P. (2018). A diffusion-matched principal component analysis (DM-PCA) based two-channel denoising procedure for high-resolution diffusion-weighted MRI. PLOS ONE, 13(4).
• Keerthivasan, M. B., Mandava, S., Johnson, K., Avery, R., Janardhanan, R., Martin, D. R., Bilgin, A., & Altbach, M. I. (2018). A multi-band double-inversion radial fast spin-echo technique for T2 cardiovascular magnetic resonance mapping of the heart. JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE, 20.
• Keerthivasan, M. B., Mandava, S., Johnson, K., Avery, R., Janardhanan, R., Martin, D. R., Bilgin, A., & Altbach, M. I. (2018). A multi-band double-inversion radial fast spin-echo technique for T2 cardiovascular magnetic resonance mapping of the heart. Journal of Cardiovascular Magnetic Resonance. doi:10.1186/s12968-018-0470
• Keerthivasan, M. B., Winegar, B., Becker, J. L., Bilgin, A., Altbach, M. I., & Saranathan, M. (2018). Clinical Utility of a Novel Ultrafast T2-Weighted Sequence for Spine Imaging. AJNR. American journal of neuroradiology, 39(8), 1568-1575.
• Liu, F., Marcellin, M. W., Goodman, N. A., & Bilgin, A. (2018). Compressive detection of direct sequence spread spectrum signals. ELECTRONICS LETTERS, 54(24), 1379-1380.
• Mandava, S., Keerthivasan, M. B., Li, Z., Martin, D. R., Altbach, M. I., & Bilgin, A. (2018). Accelerated MR parameter mapping with a union of local subspaces constraint. Magnetic resonance in medicine, 80(6), 2744-2758.
• Niazi, M. K., Lin, Y., Liu, F., Ashok, A., Marcellin, M. W., Tozbikian, G., Gurcan, M. N., & Bilgin, A. (2018). Pathological image compression for big data image analysis: Application to hotspot detection in breast cancer. Artificial intelligence in medicine.
• Liu, F., Hernandez-Cabronero, M., Sanchez, V., Marcellin, M. W., & Bilgin, A. (2017). The Current Role of Image Compression Standards in Medical Imaging. Information, 8(4).
• Pandey, A., Yoruk, U., Keerthivasan, M., Galons, J., Sharma, P., Johnson, K., Martin, D. R., Altbach, M. I., Bilgin, A., & Saranathan, M. (2017). Multiresolution Imaging using Golden Angle Stack-of-stars and Compressed Sensing for Dynamic {MR} Urography. Journal Magnetic Resonance Imaging, 46(1), 303-311.

Proceedings Publications

• Ahanonu, E., Marcellin, M. W., & Bilgin, A. (2020, Spring). Lossless Multi-Component Image Compression based on Integer Wavelet Coefficient Prediction using Convolutional Neural Networks. In IEEE Data Compression Conference.
• Fu, Z., Martin, D. R., Altbach, M. I., & Bilgin, A. (2020, August). Multi-objective Deep Learning for Joint Estimation and Detection Tasks in MRI. In Annual Meeting of the International Society for Magnetic Resonance in Medicine.
• Fu, Z., Tseng, H. W., Vedantham, S., Karellas, A., & Bilgin, A. (2020, Summer). Dedicated Breast CT: Comparative evaluation of multi-scale residual dense network and residual encoder-decoder network for deep learning-driven sparse-view reconstruction. In Annual Meeting of the American Association of Physicists in Medicine.
• Umapathy, L., Guzman Perez-Carrillo, G., Keerthivasan, M., Altbach, M. I., Winegar, B., Weinkauf, C. C., & Bilgin, A. (2020, August). StackGen-Net: A Stacked Generalization of 3D Orthogonal Convolutional Neural Networks for Improved Detection of White Matter Hyperintensities. In Annual Meeting of the International Society for Magnetic Resonance in Medicine.
• Ahanonu, E., Marcellin, M. W., & Bilgin, A. (2019, March). Clustering Regression Wavelet Analysis for Lossless Compression of Hyperspectral Imagery. In 2019 IEEE Data Compression Conference, Snowbird, UT.
• Fu, Z., Mandava, S., Li, Z., Martin, D. R., Altbach, M. I., & Bilgin, A. (2019, May). Deep Parameter Mapping with Relaxation Signal Model Driven Constraints. In 2019 Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Keerthivasan, M. B., Johnson, K., Bilgin, A., Weinkauf, C. C., & Altbach, M. I. (2019, May). Efficient T2 Mapping of the Carotid Artery using a 3D Stack-of-Stars Variable Flip Angle TSE Pulse Sequence. In 2019 Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Keerthivasan, M. B., Li, Z., Galons, J., Johnson, K., Kalb, B. T., Martin, D. R., Bilgin, A., & Altbach, M. I. (2019, May). Characterization of Abdominal Neoplasms using a Fast Inversion Recovery Radial SSFP T1 Mapping Technique. In Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Lin, Y., Liu, F., Bilgin, A., Marcellin, M. W., & Ashok, A. (2019, March). Perception-Optimized Encoding for Visually Lossy Image Compression. In 2019 IEEE Data Compression Conference, Snowbird, UT.
• Mandava, S., Keerthivasan, M. B., Martin, D. R., Altbach, M. I., & Bilgin, A. (2019, May). Radial streak artifact reduction in multi-contrast imaging and parameter mapping using beamforming. In 2019 Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Umapathy, L., Guzman Perez-Carrillo, G., Rosado-Toro, J., Kuyumcu, G., Altbach, M. I., Winegar, B., & Bilgin, A. (2019, May). Detection of White Matter Hyperintensities using Ensemble 3D Deep Learning Networks. In Proc. of 2019 Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Umapathy, L., Unger, W., Shareef, F., Arif Tiwari, H., Martin, D. R., Altbach, M. I., & Bilgin, A. (2019, May). A Cascaded Residual UNET for Fully Automated Segmentation of Prostate and Peripheral Zone in T2-weighted 3D Fast Spin Echo Images. In Proc. of 2019 Annual Meeting of the ISMRM, Montreal, QC, Canada.
• Ahanonu, E. L., Bilgin, A., & Marcellin, M. W. (2018, March). Lossless image compression using reversible integer wavelet transforms and convolutional neural networks. In Data Compression Conference.
• Altbach, M. I., Altbach, M. I., Mandava, S., Mandava, S., Johnson, K., Johnson, K., Li, Z., Li, Z., Keerthivasan, M. B., Keerthivasan, M. B., Becker, J., Becker, J., Bilgin, A., Bilgin, A., Weinkauf, C. C., & Weinkauf, C. C. (2018, June). Rapid Carotid Artery T2 and T1 Mapping Using a Radial TSE and IR-FLASH Approach. In 2018 Meeting of the International Society for Magnetic Resonance in Medicine.
• Fu, Z., Mandava, S., Keerthivasan, M. B., Li, Z., Martin, D. R., Altbach, M. I., & Bilgin, A. (2018, October). MR Parameter Mapping Using Sequential Multi-Contrast Acquisitions & Multi-Input Multi-Scale ResNet. In ISMRM Workshop on Machine Learning Part II.

Presentations

• Fu, Z., Tseng, H., Vedantham, S., Karellas, A., & Bilgin, A. (2019, Dec/Fall). Deep Learning-Driven Sparse-View Reconstruction for Radiation Dose Reduction in Dedicated Breast CT: Quantitative Evaluation.. 105th Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA), 2019 RSNA Annual Meeting Program, Abstract # SSC13-05.. Chicago, IL: Radiological Society of North America (RSNA).

Others

• Marcellin, M. W., Bilgin, A., Lalgudi, H. G., & Nadar, M. S. (2012). Lifting-based view compensated compression and remote visualization of volume rendered images.
• Bilgin, A., Kim, Y., Nadar, M. S., & Sundaresan, R. (2011). SYSTEM AND METHOD FOR MOTION-COMPENSATED COMPRESSED SENSING FOR DYNAMIC IMAGING.
• Marcellin, M. W., Bilgin, A., Lalgudi, H. G., & others, . (2011). Methods and systems for remotely visualizing images.
• Bilgin, A., Kim, Y., & Nadar, M. S. (2010). Method for Exploiting Structure in Sparse Domain for Magnetic Resonance Image Reconstruction.
• Bilgin, A., Kim, Y., & Nadar, M. S. (2010). Method for reconstruction of magnetic resonance images.
• Marcellin, M. W., & Bilgin, A. (2010). Digital intermediate (DI) processing and distribution with scalable compression in the post-production of motion pictures.
• Marcellin, M. W., & Bilgin, A. (2010). Rate control of scalably coded images.
• Marcellin, M. W., Bilgin, A., Wu, Z., & others, . (2009). Methods for decoding corrupt JPEG2000 codestreams.
• Marcellun, M., & Bilgin, A. (2008). RATE CONTROL OF SCALABLY CODED IMAGES.
• Mercellin, M., & Bilgin, A. (2007). DIGITAL INTERMEDIATE (DI) PROCESSING AND DISTRIBUTION WITH SCALABLE COMPRESSION IN THE POST-PRODUCTION OF MOTION PICTURES.
• MERCELLIN, M., & BILGIN, A. (2006). DIGITAL INTERMEDIATE (DI) PROCESSING AND DISTRIBUTION WITH SCALABLE COMPRESSION IN THE POST-PRODUCTION OF MOTION PICTURES.
• Marcellin, M. W., & Bilgin, A. (2006). Digital intermediate (DI) processing and distribution with scalable compression in the post-production of motion pictures.
• MARCELLIN, M., BILGIN, A., WU, Z., & others, . (2004). METHODS FOR DECODING CORRUPT JPEG2000 CODESTREAMS.
• Bilgin, A. (2003). A simulation model of indoor environments for ultrasonic sensors.
• Bilgin, A. (1995). Image Processing and Compression for Intelligent Vehicle Highway Systems.